#!/bin/bash

# for compilation
CFG_TYPE='cfgs'

# data
DATA_NAME=''

# restart list
RST_LST='icb ice trc'
     
# Agrif
USE_AGRIF=0
NZOOM_AGRIF=0

# length simulation
ITEND=992   ; STOCK=$((ITEND/2))
ITEND1=1984 ; STOCK1=$((ITEND1/2))

# processor set up
JPNI_REF=4 ; JPNJ_REF=8 ; NPROC_REF=$((JPNI_REF*JPNJ_REF))
JPNI_MPP=8 ; JPNJ_MPP=4 ; NPROC_MPP=$((JPNI_MPP*JPNJ_MPP))

# namelist setup
# define set_namelist_common function (could the REF setting)
define_namelist_common() {
      set_namelist namelist_cfg nn_it000 1
      set_namelist namelist_cfg nn_itend $ITEND
      set_namelist namelist_cfg nn_stock $STOCK
      set_namelist namelist_cfg jpni $JPNI_REF
      set_namelist namelist_cfg jpnj $JPNJ_REF
      set_namelist namelist_cfg ln_ctl .false.
      set_namelist namelist_cfg sn_cfctl%l_config .true.
      set_namelist namelist_cfg sn_cfctl%l_runstat .true.
      set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
      set_namelist namelist_cfg ln_linssh .true.
      }

# SHOULD this be in all_function with CONFIG as argument (need to see how it will work for AGRIF)?
# define set_namelist_REF function (that overwrite the default value set in common)
define_namelist_ref() {
      set_namelist namelist_cfg cn_exp \"${CONFIG}_ST_REF\"
      }

# SHOULD this be in all_function with CONFIG and STOCK as argument (need to see how it will work for AGRIF)?
# define set_namelist_RST function (that overwrite the default value set in common)
define_namelist_rst() {
      set_namelist namelist_cfg cn_exp \"${CONFIG}_ST_RST\"
      set_namelist namelist_cfg nn_it000 $((STOCK+1))
      set_namelist namelist_top_cfg ln_rsttr .true.
      set_namelist namelist_top_cfg nn_rsttr 2
      }

# SHOULD this be in all_function with CONFIG and JPNI_MPP JPNJ_MPP as argument (need to see how it will work for AGRIF)?
# define set_namelist_MPP function (that overwrite the default value set in common)
define_namelist_MPP() {
      set_namelist namelist_cfg cn_exp \"${CONFIG}_ST_MPP\"
      set_namelist namelist_cfg jpni $JPNI_MPP
      set_namelist namelist_cfg jpnj $JPNJ_MPP
      }

# SHOULD this be in all_function with CONFIG and L_NPROC, STOCK RST_LST as argument (need to see how it will work for AGRIF)?
link_restart() {
      for (( i=1; i<=$NPROC; i++)) ; do
         L_NPROC=$(( $i - 1 ))
         L_NPROC=`printf "%04d\n" ${L_NPROC}`
         NSTOCK8d=`printf '%08d\n' ${$STOCK}`
         ln -sf ../REF/${CONFIG}_ST_REF_${NSTOCK8d}_restart_${L_NPROC}.nc restart_${L_NPROC}.nc
         for rst in $RST_LST; do
            ln -sf ../REF/${CONFIG}_ST_REF_${NSTOCK8d}_restart_${rst}_${L_NPROC}.nc restart_${rst}_${L_NPROC}.nc
         done
      done
      }