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% (C) Xavier Perseguers 2002 - xavier.perseguers@epfl.ch

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% PREAMBLE
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\include{TexFiles/Preamble}

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% TOP MATTER
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\include{TexFiles/Top_Matter}

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% DOCUMENT
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\begin{document}

\maketitle						% generate the title

\frontmatter

\tableofcontents					% generate a table of contents
%\listoffigures					% generate a list  of figures
%\listoftables					        % generate a list of tables

\mainmatter

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% Abstract - Foreword
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\subfile{TexFiles/Chapters/Abstracts_Foreword}

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% INTRODUCTION
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\subfile{TexFiles/Chapters/Introduction}

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% CHAPTERS
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\subfile{TexFiles/Chapters/Chap_Model_Basics}

\subfile{TexFiles/Chapters/Chap_STP}			% Time discretisation (time stepping strategy)

\subfile{TexFiles/Chapters/Chap_DOM}			% Space discretisation

\subfile{TexFiles/Chapters/Chap_TRA}			% Tracer advection/diffusion equation

\subfile{TexFiles/Chapters/Chap_DYN}			% Dynamics : momentum equation

\subfile{TexFiles/Chapters/Chap_SBC}			% Surface Boundary Conditions

\subfile{TexFiles/Chapters/Chap_LBC}			% Lateral Boundary Conditions

\subfile{TexFiles/Chapters/Chap_LDF}			% Lateral diffusion

\subfile{TexFiles/Chapters/Chap_ZDF}			% Vertical diffusion

\subfile{TexFiles/Chapters/Chap_DIA}			% Outputs and Diagnostics

\subfile{TexFiles/Chapters/Chap_OBS}                    % Observation operator

\subfile{TexFiles/Chapters/Chap_ASM}                    % Assimilation increments

\subfile{TexFiles/Chapters/Chap_STO}                    % Stochastic param.

\subfile{TexFiles/Chapters/Chap_MISC}			% Miscellaneous topics

\subfile{TexFiles/Chapters/Chap_CFG}			% Predefined configurations

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% APPENDIX
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\appendix

%\subfile{TexFiles/Chapters/Chap_Conservation}
\subfile{TexFiles/Chapters/Annex_A}			% generalised vertical coordinate
\subfile{TexFiles/Chapters/Annex_B}			% diffusive operator
\subfile{TexFiles/Chapters/Annex_C}			% Discrete invariants of the eqs.
\subfile{TexFiles/Chapters/Annex_ISO}	                  % Isoneutral diffusion using triads
\subfile{TexFiles/Chapters/Annex_D}			% Coding rules
%\subfile{TexFiles/Chapters/Annex_E}	                  % Notes on some on going staff (no included in the DOC)
%\subfile{TexFiles/Chapters/Annex_Fox-Kemper}   % Notes on Fox-Kemper (no included in the DOC)
%\subfile{TexFiles/Chapters/Annex_EVP}        	% Notes on EVP (no included in the DOC)

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% INDEX
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\addcontentsline{toc}{chapter}{Index}
\printindex

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% BIBLIOGRAPHY
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\bibliographystyle{TexFiles/Styles/ametsoc}		% AMS biblio style (JPO)
\bibliography{TexFiles/Bibliography/Biblio}

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\end{document}
